The judge also issued arrest warrants for two other federation officials.
All three went voluntarily on Friday to speak with prosecutors after authorities froze their assets.
Chiriboga and another official were ordered to be held in house arrest, which is required by law because they are over 65, while the third was remanded into custody in prison.
Chiriboga has already been suspended by the football federation. His lawyer, Lucia Vallecilla, said prosecutors would have 90 days to review the finances of the federation as part of their investigation. She did not offer any further comment.
News that makes sense
Your trusted source for staying up-to-date with the world around you. Get free daily news updates and analysis, straight to your inbox.
The heads of the associations that run football in North and Latin America, CONCACAF and CONMEBOL, and others with top jobs in the world governing body FIFA were among 16 people charged on Thursday on suspicion of bribery in connection with the sale of broadcast rights.
(Reporte by José Llangarí; writing by Alexandra Valencia and Brian Ellsworth; Editing by Kevin Liffey and Chizu Nomiyama)
