Marler apologised to Lee at halftime.
Wales forward Tomas Francis was also cited for making contact with the eyes of England prop Dan Cole and England flanker James Haskell was warned following a neck-roll tackle.
Marler's disciplinary hearing will be held by an independent committee later this week.
England beat Wales 25-21 and won the Six Nations after France lost 29-18 in Scotland on Sunday.
(Reporting by Simon Jennings in Bengaluru, editing by Ed Osmond)
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