He has not competed since and will miss the Four Continents championships next month in Taiwan in order to make sure he is ready for the Winter Olympics, Japan Skating Federation director Yoshiko Kobayashi told Kyodo.
"Considering the time we have until the Olympics, (the JFA) believes that he can make a comeback," Kobayashi said. "I hope he drives the young athletes as Japan's ace."
Hanyu has resumed training but is not practising jumps just yet, Kobayashi added.
Hanyu took gold at the Sochi Games in 2014 and is also the reigning world champion, which earned him selection for Japan's Olympic team despite missing the national championships, which doubled as a qualifier, at the weekend.
The Winter Olympics run from Feb. 9-25.
(Reporting by Greg Stutchbury in Wellington; Editing by Amlan Chakraborty)