The Swiss top seed, playing his first tournament since beating Novak Djokovic to win the U.S. Open title, wore down the Spanish fourth seed Bautista Agut after a tight first set.
German Zverev, the fifth seed, upset third seed Tomas Berdych of the Czech Republic 6-4 6-4.
The 19-year-old, who has Russian roots, will be hoping it is third time lucky in his third ATP final after losing the previous two.
(Reporting by Dmitriy Rogovitskiy, editing by Ed Osmond)
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