Emery admitted an FA improper conduct charge and accepted the standard penalty.
"I kicked it for me and it went near the supporters. I said my apologies ... I kicked it because it's near me and not because of this intention," Emery had said following the incident.
Arsenal, who are fifth in the table following a 5-1 defeat by leaders Liverpool on Saturday, host Fulham on Tuesday.
(Reporting by Shrivathsa Sridhar in Bengaluru, editing by Pritha Sarkar)
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