Lyles capped his U.S. title-winning dash with a lifetime best of 9.88 as he ran down world 60m bronze medallist Ronnie Baker (9.90) to claim victory.
"Don't get me wrong. I love the 200. I love it," Lyles told reporters. "But I also like a few hundreds in the mix.
"I didn't think that my first USATF championship was going to be a 100 gold medal. I always thought it would be the 200. So to come out here to win the 100, it made me very happy.
"It proved... I am out here with the big dogs and I am trying to be just as great as them."
Lyles already had a share of the year's fastest 200m (19.69) and bounced up and down on the Drake University track in Des Monies to celebrate his latest achievement.
"Coach just gave me the ok to go all out for the final," Lyles had tweeted, and he did just that.
Baker's time was also a lifetime best with collegian Kendal Williams third in 10.00
Rodgers was not in the race after the 33-year-old pulled out of the competition before the semi-finals.
Jamaican Bolt, now retired, holds the world records in both events: 9.58 seconds in the 100m and 19.19 in the 200.
Collegiate champion Aleia Hobbs continued her fine season of sprinting by taking the women's title in 10.91 seconds. Ashley Henderson was second in 10.96 with Olympian Jenna Prandini two-hundredths of a second adrift.
Olympic and world triple jump champion Christian Taylor both ran and jumped on a busy afternoon. Taylor clocked a non-qualifying 45.95 seconds in the 400m semi-finals, then stepped over to the triple jump pit where he fouled on his only attempt.
World record holder Keni Harrison was a clear leader in women's 100m hurdles qualifying, winning her preliminary in 12.46 seconds, and Ajee Wilson topped the women's 800m semi-finals in 1:59.34.
Erik Sowinski posted the top men's 800m semi-final time, 1:46:39 and Zach Ziemek won the decathlon with 8,394 points.
The meeting continues through Sunday with the winner of field events and races through 1,500m qualifying for the July 14-15 Athletics World Cup in London.
(Reporting by Gene Cherry in Raleigh, North Carolina; Editing by John O'Brien)
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