A hearing has been requested, with a date to be set in due course, the FA said.
The 47-year-old Spaniard wore the ribbon during his side's 3-0 League Cup final victory over Arsenal at Wembley Stadium. Many City fans also wore yellow ribbons which were being handed out on the Wembley Way approach to England's national stadium before kickoff.
However, Guardiola did not wear the ribbon during Sunday's 1-0 league win over Chelsea.
Earlier on Monday, FA chief executive Martin Glenn spoke out strongly in defence of his organisation's decision to charge Guardiola.
Glenn later apologised over comments he made regarding political and religious symbols in which he included the Star of David and the Nazi swastika among those that should be kept out of the game.
(Reporting by Shrivathsa Sridhar in Bengaluru, editing by Pritha Sarkar)
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